[Home ] [Archive]   [ فارسی ]  
:: Main :: About :: Current Issue :: Archive :: Search :: Submit :: Contact ::
Main Menu
Home::
Journal Information::
Articles archive::
For Authors::
For Reviewers::
Registration::
Contact us::
Site Facilities::
::
Search in website

Advanced Search
..
Receive site information
Enter your Email in the following box to receive the site news and information.
..
Indexing Databases

AWT IMAGE

    www.isc.gov.ir 

..
:: Volume 8, Issue 3 (9-2020) ::
JAIR 2020, 8(3): 19-26 Back to browse issues page
Molecular investigation and DNA Barcoding of Platycephalus indicus from the Persian Gulf
Sajjad Pourmozaffar , Saeid Tamadoni Jahromi * , Mohsen Gozari , Hojjatolah Foroughifard , Roghayeh Amiz
Abstract:   (2588 Views)
This study aimed to use mitochondrial DNA barcoding method to undrestand better toxanomic status of the Platycephalus indus and find genetic linkage with other reported specimens from different parts of the world as well as to manage the optimal utilization of native species and sustainable conservation. Sampling was performed from coastal waters of Hormozgan province. DNA was extracted from the dorsal fin using DNeasy Tissue Kit.  Phylogenetic relationships of Platycephalus indus using comparisons with those found in the NCBI Gene bank showed that samples obtained from the Persian Gulf showed a monophyletic clade along with samples from China and Saudi Arabia. In this study, it was found that the sample from the Persian Gulf and also other reported samples can be separated with the genetic distance between 0.002 to 0.095, which confirms the effective use of the COI genome in barcoding and genetic distance determination according to geographical dispersion as well as morphological characteristics. The haplotype network plot of the studied species also showed the haplotype distribution of the studied species compared to other haplotypes. Based on the obtained results, it can be assumed that the distribution of this species can be affected by the possible migration of this species.
 
Keywords: Barcoding, Platycephalus indicus, Cytochrome Oxidase I gene (COI)
Full-Text [PDF 793 kb]   (594 Downloads)    
Type of Study: Research | Subject: Special
Received: 2020/02/5 | Accepted: 2020/02/22 | Published: 2021/01/26
References
1. Bindle H., Forster P., Röhl A. 1999. Median‐joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution, 16: 37- 48. [DOI:10.1093/oxfordjournals.molbev.a026036]
2. Beacham T.D., Lapointe M., Candy J.R., McIn¬tosh B., MacConnachie C., Tabata A., Kaukinen K., Deng L., Miller K.M., Withler R.E. 2004. Stock identification of Fraser River sockeye salm¬on (Oncorhynchus nerka) using microsatellites and major histocompatibility complex variation. Transactions of the American Fisheries Society, 133:1106-1126. [DOI:10.1577/T04-001.1]
3. Bian X.D., Zhang X.M., Gao T.X., Xiao Y.S. 2008. Morphological and genetic identification of Japanese halfbeak (Hyporhamphus sajori) eggs. Journal of Fishery Sciences of China, 32: 342-352.
4. Chang H., Sha X., He G., Song L. 1980. Adscription of the morphological characters of the eggs and larvae of the flathead fish Platycephalus indicus. Journal of Oceanology and Limnology, 11: 161-171.
5. Chen W. 1982. A report on the peculiarities of sexual maturation of flathead fish Platycephalus indicus Linnaeus. Trans. Journal of Oceanology and Limnology, 1: 36-40.
6. Cheng J., Wang Z., Song N. 2019. Phylogeographic analysis of the genus Platycephalus along the coastline of the northwestern Pacific inferred by mitochondrial DNA. BMC Evolutionary Biology, 19(159): 2-16. [DOI:10.1186/s12862-019-1477-1]
7. Domingues R.R., Amorim A.F., Hilsdorf A.W.S. 2013. Genetic identification of Carcharhinus sharks from the southwest Atlantic Ocean (Chondrichthyes: Carcharhiniformes). Journal of applied Ichthyology, 29: 738-742. [DOI:10.1111/jai.12154]
8. Froese R., Pauly D. 2007. Platycephalidae. Available in www.FishBase.org.
9. Gao T.X., Ji D.P., Xiao Y.S., Xue T.Q., Yanagimoto T., Setoguma T. 2011. Description and DNA barcoding of a new Sillago species, Sillago sinica (Perciformes: Sillaginidae), from coastal waters of China. Zoological Studies, 50: 254-263.
10. Garcia S., Reset L.L. 1981. Life cycles, dynamics, exploitation and management of coastal penaeid shrimp stock. FAO Fishery Technical Report, 203, 0215. Rome, Italy. 215p.
11. Hebert P.D.N., Cywinska A., Ball S.L., Waard J.R. 2003. Biological identification through DNA barcodes. Proceedings of the Royal Society part B, Biological Sciences, 270: 313-321. [DOI:10.1098/rspb.2002.2218]
12. Hajibabaei M., Singer G.A.C., Hebert P.D.N., Hickey D.A. 2007. DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. Trends Genet, 23: 167-172. [DOI:10.1016/j.tig.2007.02.001]
13. Ivanova N.V., Zemlak T.S., Hanner R.H., Hebert P.D. 2007. Universal primer cocktails for fish DNA barcoding. Molecular Ecology Notes, 7: 544-548. [DOI:10.1111/j.1471-8286.2007.01748.x]
14. Imamura H. 2015: Taxonomic revision of the flathead fish genus Platycephalus Bloch, 1785 (Teleostei: Platycephalidae) from Australia, with description of a new species. Zootaxa, 3904 (2): 151-207. [DOI:10.11646/zootaxa.3904.2.1]
15. Klimova A., Phillips C.D., Fietz K., Olsen M.T., Harwood J., Amos W., Hoffman J.I. 2014. Global population structure and demographic history of the grey seal. Molecular Ecology, 23:3999-4017. [DOI:10.1111/mec.12850]
16. Knapp L.W. 1999. Platycephalidae. In: FAO species identification guide for fishery purposes. The living marine resources of the Western Central Pacific (eds. K.E. Carpenter and V.H. Niem), Volume 4.Bony Fishes Part 2 (Mugilidae to Carangidae), FAO, Rome, Italy. pp: 2385-2421.
17. King E.O., Ward M.K., Raney D.E. 1954. Two simple media for the demonstration of pyocyanin and fluorescin. Journal of Laboratory and Clinical Medicine, 44: 301-307. Masuda Y., Ozawa T., Onoue O., Hamada T. 2000. Age and growth of the fathead, Platycephalus indicus, from the coastal waters of west Kyushu, Japan. Fisheries Research, 46: 113-121. Mohammadi Kia D., Kamrani A., Taherizadeh M.R., Saghar N. 2012. A comparative study of some biological characteristics of tapeworm in the coastal waters of Bandar Abbas. Journal of Aquatic Ecology, 2 (3): 56-41. [DOI:10.1016/S0165-7836(00)00138-7]
18. Nakabo T. 2002. Fishes of Japan with Pictorial Keys to the Species, English edition: Tokai University Press, Tokyo, Japan. 1749p.
19. Pinera J.A., Blanco G., Vázquez E., Sánchez J.A. 2007. Genetic diversity of black spot seabream (Pagellus bogaraveo) populations Spanish Coasts: a preliminary study. Marine Biology, 151:2153-2158. [DOI:10.1007/s00227-007-0665-5]
20. Puckridge M., Andreakis N., Appleyard S.A., Ward R.D. 2013. Cryptic diversity in flathead fishes (Scorpaeniformes: Platycephalidae) across the indo-West Pacific uncovered by DNA barcoding. Molecular Ecology Resources, 13:32-42. [DOI:10.1111/1755-0998.12022]
21. Rozas J., Sanchez-DelBarrio J.C., Messeguer X., Rozas R. 2003. "DnaSP, DNA polymorphism analyses by the coalescent and other methods." Bioinformatics, 19(18):2496-2497 [DOI:10.1093/bioinformatics/btg359]
22. Qin Y., Song N., Zou J.W., Zhang Z.H., Cheng G.P., Gao T.X., Zhang X.M. 2013. A new record of a flathead fish (Teleostei: Platycephalidae) from China based on morphological characters and DNA barcoding. Chinese Journal of Oceanology and Limnology, 31(3):617-24. [DOI:10.1007/s00343-013-2186-z]
23. Shao K.T., Chen J.P. 1987. Fishes of the family Platycephalidae (Teleostei: Platycephaloidei) of Taiwan with descriptions of two new species. Bulletin of the Institute of Zoology, Academia Sinica, 26: 77-94.
24. Thompson J.D. Higgins, D.G., Gibson T.J. 1994. Clustal W improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions [DOI:10.1093/nar/22.22.4673]
25. specific gap penalties and weight matrix choice. Nucleic Acids Research, 22: 4673-4680.
26. Ward R.D., Hanner R., Hebert P.D.N. 2009. The campaign to DNA barcode all fishes, FISH-BOL. The Journal of Fish Biology, 74: 329-356. [DOI:10.1111/j.1095-8649.2008.02080.x]
27. Ward R.D., Zemlak T.S., Innes B.H., Last P.R., Herbert P.D.N. 2005. DNA barcoding Australia's fish species. Philosophical Transactions of the Royal Society, London Series B: Biological Sciences, 360(1462): 1847-1857. [DOI:10.1098/rstb.2005.1716]
28. Wang H., Kesinger J.W., Zhou Q., Matrin G., Turner S., 2008. Identification and characterization of zebra fish ocular formation genes. Genome, 51(3):222-235. [DOI:10.1139/G07-098]
29. Xiao J.G., Song N., GAO T.X., McKay R.J. 2016. Redescription and DNA barcoding of Sillago indica (Perciformes: Sillaginidae) from the coast of Pakistan. Pakistan Journal of Zoology, 48: 317-323.
30. Zemlak T.S., Ward R.D., Connell A.D., Holmes B.H., Hebert P.D.N. 2009. DNA barcoding reveals overlooked marine fishes. Molecular Ecology Resources, 9(Suppl-1): 237-242. [DOI:10.1111/j.1755-0998.2009.02649.x]
31. Zhang C., Cheng Q., Zheng B., Li S., Zheng W., Wang W. 1994. The fishes of the Yellow and Bohai Sea. The Sueichan Press, Keelung, Taiwan. pp: 255-256.
Send email to the article author

Add your comments about this article
Your username or Email:

CAPTCHA



XML   Persian Abstract   Print


Download citation:
BibTeX | RIS | EndNote | Medlars | ProCite | Reference Manager | RefWorks
Send citation to:

Pourmozaffar S, Tamadoni Jahromi S, Gozari M, Foroughifard H, Amiz R. Molecular investigation and DNA Barcoding of Platycephalus indicus from the Persian Gulf. JAIR 2020; 8 (3) :19-26
URL: http://jair.gonbad.ac.ir/article-1-690-en.html


Rights and permissions
Creative Commons License This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.
Volume 8, Issue 3 (9-2020) Back to browse issues page
نشریه علمی پژوهشی پژوهشهای ماهی شناسی کاربردی Journal of Applied Ichthyological Research
Persian site map - English site map - Created in 0.12 seconds with 39 queries by YEKTAWEB 4692