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:: Volume 8, Issue 3 (9-2020) ::
JAIR 2020, 8(3): 12-18 Back to browse issues page
Study of genetic diversity of Dussumieria acuta (Valenciennes, 1847) in Persian Gulf and Oman sea (Coast of the Hormozgan Province) using Cytochrome oxidase subunit I gene (COI)
Ghasem Askari , Rasoul Ghorbani * , Ali Shabani , Abdolrasoul Mahini , Farhad Keymaram , Rahmat Nadafi
Abstract:   (2435 Views)
In this study 12 specimens were collected from Bandar Jask, Qeshm Island and Bandare Lengeh in Hormozgan Province. DNA extraction was performed using Phenol-Chloroform method. A partial DNA sequence of Cytochrome oxidase subunit I gene (COI) was used to evaluate genetic diversity. The sequence of Cytochrome oxidase subunit I gene was done using specific primers designed based on sequences registered in NCBI GenBank. The diversity of 619 bp of COI was estimated. Gene sequencing of samples were compared with using MEGA5 and Bioedit7 software. Also, polymorphism or haplotype frequency was evaluated using dnaSp7 software. Results showed that there was low genetic distance equals to among all population and 9 haplotypes among samples were determined.
Keywords: Genetic diversity, COI, Rainbow sardine, Hormozgan Province
Full-Text [PDF 899 kb]   (913 Downloads)    
Type of Study: Research | Subject: Special
Received: 2017/10/7 | Accepted: 2017/12/13 | Published: 2021/01/26
References
1. Atarhouch T., Ruber L., Gonzalez E.G., Albert E.M., Rami M., Dakkak A., Zardoya R. 2006. Signature of an early genetic bottleneck in a population of Moroccan sardines (Sardinella pilchardus), Molecular Phyogenetics and evolution, 39:373-383. [DOI:10.1016/j.ympev.2005.08.003]
2. Azpeitia R.M., López-Martínez J., Rábago-Quiroz C.H., Nevárez-Martínez M.O., Herrera-Valdivia E. 2013. Growth and mortality rates of Pseudupeneus grandisquamis and Urobatis halleri bycatch species in the shrimp fishery. Hidrobiológica, 23(3): 386-393.
3. Froese R., Pauly D. 2015. FishBase. World Wide Web electronic publication http://www.fishbase.org.
4. Hillis D.M., Moritz C., Mable B.K. 1996. Molecular Systematics. 2 edition. Sunderland, MA: Sinauer Associates, Incorporations. USA. [DOI:10.2307/1447682]
5. Inoue K., Wen R., Rehg J.E., Adachi M., Cleveland J.L., Roussel M.F., Sherr C.J. 2000. Disruption of the ARF transcriptional activator DMP1 facilitates cell immortalization, Ras transformation, and tumor genesis. Genes and Development, 14:1797-809. [DOI:10.1101/gad.14.14.1797]
6. Iranian Fisheries Statistics. 2013. Planning Office. Department of Statistics and Fisheries Studies. Tehran, Iran. 33p.
7. Jonas p., Santos B.S., Ong S.P., Basiao Z.U., Fontanilla I.K.C., Cao E.P. 2011. DNA Barcoding of the Philippine Endemic Freshwater Sardine Sardinella tawilis (Clupeiformes: Clupeidae) and Its Marine Relatives. Philippine Agricultural Scientist, 94(3): 248-257.
8. Konyeh F., Zeraat Pisheh F. 2017. Length-weight relationship for 4 economical species in north coast of Persian Gulf. Shil-journal, 5: 1-4.
9. Liu Y.G., Yu Z.G., Bao B.L., Sun X.Q., Shi L. 2009. Population genetics studies of half-smoth tongue sole Cynoglossus semilaevi Using ISSR markers, Biochemical systematics and ecology, 36: 821-827. [DOI:10.1016/j.bse.2008.09.003]
10. Magoulas A., Castilho R., Caetano S., Marcato S., Patarnello T. 2006. Mitochondrial DNA reveals a mosaic pattern of phylogeographical structure in Atlantic and Mediterranean population of anchovy ( Engraulis encrasicolus), Molecular Phylogenetic and evolution, 39: 734-746. [DOI:10.1016/j.ympev.2006.01.016]
11. Murphy R.W., Sites J.W., Buth D.G., Haufler C.H. 1996. Proteins: Isozyme Electrophoresis. D.M., Hillis C., Moritz B.K., Mable, Molecular Systematics, 2nd edition .Massachusetts: Sinauer Associates. Sunderland, MA, USA. pp: 51-120.
12. Parrish R.H., Serra R., Grant W.S. 1989. The monotypic sardines, Sardina and Sardinops: their taxonomy, distribution, stock structure, and zoogeography. Canadian Journal of Fisheries and Aquatic Sciences, 46: 2019-2036. [DOI:10.1139/f89-251]
13. Salarpour A., Behzadi S., Darvishi M., Momeni M. 2007. Assessment of Sardinella sindensis of the costal Qeshm Island. Iran Fisheries Journal, 4: 121-132.
14. Salarpour A., Darvishi M. 2005. Reproduction characteristics of sind sardine (Sardinella sindensis) in Jask coastal waters. Pajouhesh and Sazandegi, 70: 59-64.
15. Salarpour A., Kamrani A., Zarshenas A., Darvishi M., Jokar K., Karimzade R., Sobhani A. 2002. Investigation of the Hunting Level of Fish Sardines in Jask Area and its Relationship with Hydrological Parameters. Ecology Institute of Persian Gulf and Oman Sea. 65p.
16. Salarpour A., Sobhani A., Barani M. 2012. Assessment of sardines and moto fishes with emphasis on Bandar Lengeh
17. and Qeshm Island. Institute for Fisheries Research, 127p.
18. Tudela S., Garcya-Marynn J.L., Pla C. 1999. Genetic structure of the European anchovy, Engraulis encrasicolus, in the north-west Mediterranean, Journal of Experimental Marine Biology and Ecology, 234: 95-109. [DOI:10.1016/S0022-0981(98)00142-7]
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askari G, Ghorbani R, Shabani A, Mahini A, Keymaram F, Nadafi R. Study of genetic diversity of Dussumieria acuta (Valenciennes, 1847) in Persian Gulf and Oman sea (Coast of the Hormozgan Province) using Cytochrome oxidase subunit I gene (COI). JAIR 2020; 8 (3) :12-18
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Volume 8, Issue 3 (9-2020) Back to browse issues page
نشریه علمی پژوهشی پژوهشهای ماهی شناسی کاربردی Journal of Applied Ichthyological Research
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